The Linac Coherent Light Source (LCLS) is an X- ray free electron laser (XFEL) facility enabling the study of the structure and dynamics of single macromolecules. A major upgrade will bring the repetition rate of the X-ray source from 120 to 1 million pulses per second. Exascale high performance computing (HPC) capabilities will be required to process the corresponding data rates. We present SpiniFEL, an application used for structure determination of proteins from single-particle imaging (SPI) experiments. An emerging technique for imaging individual proteins and other large molecular complexes by outrunning radiation damage, SPI breaks free from the need for crystallization (which is difficult for some proteins) and allows for imaging molecular dynamics at near ambient conditions. SpiniFEL is being developed to run on supercomputers in near real-time while an experiment is taking place, so that the feedback about the data can guide the data collection strategy. We describe here how we reformulated the mathematical framework for parallelizable implementation and accelerated the most compute intensive parts of the application. We also describe the use of Pygion, a Python interface for the Legion task-based programming model and compare to our existing MPI+GPU implementation.
Surface erosion and secondary electron emission (SEE) have been identified as the most critical life-limiting factors in channel walls of Hall-effect thrusters for space propulsion. Recent wall concepts based on micro-architected surfaces have been proposed to mitigate surface erosion and SEE. The idea behind these designs is to take advantage of very-high surface-to-volume ratios to reduce SEE and ion erosion by internal trapping and redeposition. This has resulted in renewed interest to study electron-electron processes in relevant thruster wall materials. In this work, we present calculations of SEE yields in micro-porous hexagonal BN surfaces using stochastic simulations of electron-material interactions in discretized surface geometries. Our model consists of two complementary parts. First we study SEE as a function of primary electron energy and incidence angle in flat surfaces using Monte Carlo simulations of electron multi-scattering processes. The results are then used to represent the response function of discrete surface elements to individual electron rays generated using a ray-tracing Monte Carlo model. We find that micro-porous surfaces result in SEE yield reductions of over 50% in the energy range experienced in Hall thrusters. This points to the suitability of these micro-architected surface concepts to mitigate SEE-related issues in compact electric propulsion devices.
Secondary electron emission (SEE) from inner linings of plasma chambers in electric thrusters for space propulsion can have a disruptive effect on device performance and efficiency. SEE is typically calculated using elastic and inelastic electron scattering theory by way of Monte Carlo simulations of independent electron trajectories. However, in practice the method can only be applied for ideally smooth surfaces and thin films, not representative of real material surfaces. Recently, micro-architected surfaces with nanometric features have been proposed to mitigate SEE and ion-induced erosion in plasma-exposed thruster linings. In this paper, we propose an approach for calculating secondary electron yields from surfaces with arbitrarily-complex geometries using an extension of the emph{ray tracing} Monte Carlo (RTMC) technique. We study nanofoam structures with varying porosities as representative micro-architected surfaces, and use RTMC to generate primary electron trajectories and track secondary electrons until their escape from the outer surface. Actual surfaces are represented as a discrete finite element meshes obtained from X-ray tomography images of tungsten nanofoams. At the local level, primary rays impinging into surface elements produce daughter rays of secondary electrons whose number, energies and angular characteristics are set by pre-calculated tables of SEE yields and energies from ideally-flat surfaces. We find that these micro-architected geometries can reduce SEE by up to 50% with respect to flat surfaces depending on porosity and primary electron energy.
We present calculations of secondary electron emission (SEE) yields in tungsten as a function of primary electron energies between 50 eV and 1 keV and incidence angles between 0 and 90{deg}. We conduct a review of the established Monte Carlo methods to simulate multiple electron scattering in solids and select the best suited to study SEE in high-Z metals. We generate secondary electron yield and emission energy functions of the incident energy and angle and fit them to bivariate fitting functions using symbolic regression. We compare the numerical results with experimental data, with good agreement found. Our calculations are the first step towards studying SEE in nanoarchitected surfaces for electric propulsion chamber walls.
