Let $G$ be a transitive permutation group on a finite set $Omega$ and recall that a base for $G$ is a subset of $Omega$ with trivial pointwise stabiliser. The base size of $G$, denoted $b(G)$, is the minimal size of a base. If $b(G)=2$ then we can study the Saxl graph $Sigma(G)$ of $G$, which has vertex set $Omega$ and two vertices are adjacent if they form a base. This is a vertex-transitive graph, which is conjectured to be connected with diameter at most $2$ when $G$ is primitive. In this paper, we combine probabilistic and computational methods to prove a strong form of this conjecture for all almost simple primitive groups with soluble point stabilisers. In this setting, we also establish best possible lower bounds on the clique and independence numbers of $Sigma(G)$ and we determine the groups with a unique regular suborbit, which can be interpreted in terms of the valency of $Sigma(G)$.
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