We present a deep learning solution to the problem of localization of magnetoencephalography (MEG) brain signals. The proposed deep model architectures are tuned for single and multiple time point MEG data, and can estimate varying numbers of dipole sources. Results from simulated MEG data on the cortical surface of a real human subject demonstrated improvements against the popular RAP-MUSIC localization algorithm in specific scenarios with varying SNR levels, inter-source correlation values, and number of sources. Importantly, the deep learning models had robust performance to forward model errors and a significant reduction in computation time, to a fraction of 1 ms, paving the way to real-time MEG source localization.
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