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We use a high-temperature chemical network to derive the molecular abundances in axisymmetric accretion disk models around active galactic nuclei (AGNs) within 100 pc using simple radial and vertical density and temperature distributions motivated by more detailed physical models. We explore the effects of X-ray irradiation and cosmic ray ionization on the spatial distribution of the molecular abundances of CO, CN, CS, HCN, HCO+, HC3N, C2H, and c-C3H2 using a variety of plausible disk structures. These simple models have molecular regions with a layer of X-ray dominated regions, a midplane without the strong influence of X-rays, and a high-temperature region in the inner portion with moderate X-ray flux where families of polyynes (C$_{rm n}$H$_{2}$) and cyanopolyynes can be enhanced. For the high midplane density disks we explore, we find that cosmic rays produced by supernovae do not significantly affect the regions unless the star formation efficiency significantly exceeds that of the Milky Way. We highlight molecular abundance observations and ratios that may distinguish among theoretical models of the density distribution in AGN disks. Finally, we assess the importance of the shock crossing time and the accretion time relative to the formation time for various chemical species. Vertical column densities are tabulated for a number of molecular species at both the characteristic shock crossing time and steady state. Although we do not attempt to fit any particular system or set of observations, we discuss our models and results in the context of the nearby AGN NGC 1068.
Protoplanetary disks are the target of many chemical studies (both observational and theoretical) as they contain the building material for planets. Their large vertical and radial gradients in density and temperature make them challenging objects fo
Large-scale cosmological simulations of galaxy formation currently do not resolve the densities at which molecular hydrogen forms, implying that the atomic-to-molecular transition must be modeled either on the fly or in postprocessing. We present an
We perform collisionless N-body simulations to investigate the evolution of the structural and kinematical properties of simulated thick disks induced by the growth of an embedded thin disk. The thick disks used in the present study originate from co
We study outflows driven by Active Galactic Nuclei (AGNs) using high- resolution simulations of idealized z=2 isolated disk galaxies. Episodic accretion events lead to outflows with velocities >1000 km/s and mass outflow rates up to the star formatio
Passive early-type galaxies dominate cluster cores at z $lesssim$1.5. At higher redshift, cluster core galaxies are observed to have still on-going star-formation, fuelled by cold molecular gas. We measure the molecular gas reservoir of the central r