We discuss the geometric phases and flux densities for the metastable states of hydrogen with principal quantum number n=2 being subjected to adiabatically varying external electric and magnetic fields. Convenient representations of the flux densities as complex integrals are derived. Both, parity conserving (PC) and parity violating (PV) flux densities and phases are identified. General expressions for the flux densities following from rotational invariance are derived. Specific cases of external fields are discussed. In a pure magnetic field the phases are given by the geometry of the path in magnetic field space. But for electric fields in presence of a constant magnetic field and for electric plus magnetic fields the geometric phases carry information on the atomic parameters, in particular, on the PV atomic interaction. We show that for our metastable states also the decay rates can be influenced by the geometric phases and we give a concrete example for this effect. Finally we emphasise that the general relations derived here for geometric phases and flux densities are also valid for other atomic systems having stable or metastable states, for instance, for He with n=2. Thus, a measurement of geometric phases may give important experimental information on the mass matrix and the electric and magnetic dipole matrices for such systems. This could be used as a check of corresponding theoretical calculations of wave functions and matrix elements.