We propose a method for measuring the temperature of strongly correlated phases of ultracold atom gases confined in spin-dependent optical lattices. In this technique, a small number of impurity atoms--trapped in a state that does not experience the lattice potential--are in thermal contact with atoms bound to the lattice. The impurity serves as a thermometer for the system because its temperature can be straightforwardly measured using time-of-flight expansion velocity. This technique may be useful for resolving many open questions regarding thermalization in these isolated systems. We discuss the theory behind this method and demonstrate proof-of-principle experiments, including the first realization of a 3D spin-dependent lattice in the strongly correlated regime.
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