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We preprocess the raw NMR spectrum and extract key characteristic features by using two different methodologies, called equidistant sampling and peak sampling for subsequent substructure pattern recognition; meanwhile may provide the alternative strategy to address the imbalance issue of the NMR dataset frequently encountered in dataset collection of statistical modeling and establish two conventional SVM and KNN models to assess the capability of two feature selection, respectively. Our results in this study show that the models using the selected features of peak sampling outperform the ones using the other. Then we build the Recurrent Neural Network (RNN) model trained by Data B collected from peak sampling. Furthermore, we illustrate the easier optimization of hyper parameters and the better generalization ability of the RNN deep learning model by comparison with traditional machine learning SVM and KNN models in detail.
This paper presents a method to identify substructures in NMR spectra of mixtures, specifically 2D spectra, using a bespoke image-based Convolutional Neural Network application. This is done using HSQC and HMBC spectra separately and in combination.
Metabolite structure identification has become the major bottleneck of the mass spectrometry based metabolomics research. Till now, number of mass spectra databases and search algorithms have been developed to address this issue. However, two critica
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The International Symposium on Biomedical Imaging (ISBI) held a grand challenge to evaluate computational systems for the automated detection of metastatic breast cancer in whole slide images of sentinel lymph node biopsies. Our team won both competi
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