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This work presents a new physically-motivated supervised machine learning method, Hydro-BAM, to reproduce the three-dimensional Lyman-$alpha$ forest field in real and in redshift space learning from a reference hydrodynamic simulation, thereby saving about 7 orders of magnitude in computing time. We show that our method is accurate up to $ksim1,h,rm{Mpc}^{-1}$ in the one- (PDF), two- (power-spectra) and three-point (bi-spectra) statistics of the reconstructed fields. When compared to the reference simulation including redshift space distortions, our method achieves deviations of $lesssim2%$ up to $k=0.6,h,rm{Mpc}^{-1}$ in the monopole, $lesssim5%$ up to $k=0.9,h,rm{Mpc}^{-1}$ in the quadrupole. The bi-spectrum is well reproduced for triangle configurations with sides up to $k=0.8,h,rm{Mpc}^{-1}$. In contrast, the commonly-adopted Fluctuating Gunn-Peterson approximation shows significant deviations already neglecting peculiar motions at configurations with sides of $k=0.2-0.4,h,rm{Mpc}^{-1}$ in the bi-spectrum, being also significantly less accurate in the power-spectrum (within 5$%$ up to $k=0.7,h,rm{Mpc}^{-1}$). We conclude that an accurate analysis of the Lyman-$alpha$ forest requires considering the complex baryonic thermodynamical large-scale structure relations. Our hierarchical domain specific machine learning method can efficiently exploit this and is ready to generate accurate Lyman-$alpha$ forest mock catalogues covering large volumes required by surveys such as DESI and WEAVE.
The baryon acoustic oscillation (BAO) scale acts as a standard ruler for measuring cosmological distances and has therefore emerged as a leading probe of cosmic expansion history. However, any physical effect that alters the length of the ruler can l
Using the Ly$alpha$ mass assignment scheme (LyMAS), we make theoretical predictions for the 3-dimensional 3-point correlation function (3PCF) of the Ly$alpha$ forest at redshift $z=2.3$. We bootstrap results from the (100 $h^{-1} mbox{ Mpc}$)$^3$ Hor
We investigate the large-scale structure of Lyman-alpha emission intensity in the Universe at redshifts z=2-3.5 using cross-correlation techniques. Our Lya emission samples are spectra of BOSS Luminous Red Galaxies from Data Release 12 with the best
Using a sample of approximately 14,000 z>2.1 quasars observed in the first year of the Baryon Oscillation Spectroscopic Survey (BOSS), we measure the three-dimensional correlation function of absorption in the Lyman-alpha forest. The angle-averaged c
The amplitude of fluctuations in the Ly-a forest on small spatial scales is sensitive to the temperature of the IGM and its spatial fluctuations. The temperature of the IGM and its spatial variations contain important information about hydrogen and h