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We consider inference from non-random samples in data-rich settings where high-dimensional auxiliary information is available both in the sample and the target population, with survey inference being a special case. We propose a regularized prediction approach that predicts the outcomes in the population using a large number of auxiliary variables such that the ignorability assumption is reasonable while the Bayesian framework is straightforward for quantification of uncertainty. Besides the auxiliary variables, inspired by Little & An (2004), we also extend the approach by estimating the propensity score for a unit to be included in the sample and also including it as a predictor in the machine learning models. We show through simulation studies that the regularized predictions using soft Bayesian additive regression trees yield valid inference for the population means and coverage rates close to the nominal levels. We demonstrate the application of the proposed methods using two different real data applications, one in a survey and one in an epidemiology study.
We propose a framework for Bayesian non-parametric estimation of the rate at which new infections occur assuming that the epidemic is partially observed. The developed methodology relies on modelling the rate at which new infections occur as a functi
Models defined by stochastic differential equations (SDEs) allow for the representation of random variability in dynamical systems. The relevance of this class of models is growing in many applied research areas and is already a standard tool to mode
This preprint has been reviewed and recommended by Peer Community In Evolutionary Biology (http://dx.doi.org/10.24072/pci.evolbiol.100036). Approximate Bayesian computation (ABC) has grown into a standard methodology that manages Bayesian inference f
Many panel studies collect refreshment samples---new, randomly sampled respondents who complete the questionnaire at the same time as a subsequent wave of the panel. With appropriate modeling, these samples can be leveraged to correct inferences for
We describe a new and computationally efficient Bayesian methodology for inferring species trees and demographics from unlinked binary markers. Likelihood calculations are carried out using diffusion models of allele frequency dynamics combined with