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Nonlinear solid friction between the gel matrix and DNA molecules inhibits the motion of DNA during electrophoresis. We report enhanced mobility of the DNA using external noise to alleviate the effect of solid friction. In presence of noise, the mobility of 1 kbp DNA increases ~ 86% compared to the conventional gel electrophoresis, whereas the increment is more than ~113 % for 6 kbp DNA. At low power of the noise, super Arrhenius kinetics suggest the collective behavior of the activated motion of DNA molecules. Stochastic simulation following modified Langevin equation with the asymmetric pore size distribution of the agarose gel successfully predicts the mobility of DNA molecules and estimates the huge frictional force at the DNA-gel matrix interface.
We investigate the translocation of a single stranded DNA through a pore which fluctuates between two conformations, using coupled master equations. The probability density function of the first passage times (FPT) of the translocation process is cal
Solid-state nanopores are single molecule sensors that measure changes in ionic current as charged polymers such as DNA pass through. Here, we present comprehensive experiments on the length, voltage and salt dependence of the frequency of double-str
We investigate the dynamics of DNA translocation through a nanopore using 2D Langevin dynamics simulations, focusing on the dependence of the translocation dynamics on the details of DNA sequences. The DNA molecules studied in this work are built fro
We investigate the dynamics of DNA translocation through a nanopore driven by an external force using Langevin dynamics simulations in two dimensions (2D) to study how the translocation dynamics depend on the details of the DNA sequences. We consider
Electron transfer (ET) in biological molecules such as peptides and proteins consists of electrons moving between well defined localized states (donors to acceptors) through a tunneling process. Here we present an analytical model for ET by tunneling