In this work we present dipole scattering amplitudes, including the dependence on the impact-parameter, for a variety of nuclear targets of interest for the electron-ion colliders (EICs) being currently designed. These amplitudes are obtained by numerically solving the Balitsky-Kovchegov equation with the collinearly improved kernel. Two different cases are studied: initial conditions representing the nucleus under consideration and the solutions based on an initial condition representing a proton complemented by a Glauber-Gribov prescription to obtain dipole-nucleus amplitudes. We find that the energy evolution of these two approaches differ. We use the obtained dipole scattering amplitudes to predict ($i$) nuclear structure functions that can be measured in deep-inelastic scattering at EICs and ($ii$) nuclear suppression factors that reveal the energy evolution of shadowing for the different cases we studied. We compare our predictions with the available data.