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Convolutional neural networks for semantic segmentation suffer from low performance at object boundaries. In medical imaging, accurate representation of tissue surfaces and volumes is important for tracking of disease biomarkers such as tissue morphology and shape features. In this work, we propose a novel distance map derived loss penalty term for semantic segmentation. We propose to use distance maps, derived from ground truth masks, to create a penalty term, guiding the networks focus towards hard-to-segment boundary regions. We investigate the effects of this penalizing factor against cross-entropy, Dice, and focal loss, among others, evaluating performance on a 3D MRI bone segmentation task from the publicly available Osteoarthritis Initiative dataset. We observe a significant improvement in the quality of segmentation, with better shape preservation at bone boundaries and areas affected by partial volume. We ultimately aim to use our loss penalty term to improve the extraction of shape biomarkers and derive metrics to quantitatively evaluate the preservation of shape.
Automatic building extraction from aerial imagery has several applications in urban planning, disaster management, and change detection. In recent years, several works have adopted deep convolutional neural networks (CNNs) for building extraction, si
Raster-scan optoacoustic mesoscopy (RSOM) is a powerful, non-invasive optical imaging technique for functional, anatomical, and molecular skin and tissue analysis. However, both the manual and the automated analysis of such images are challenging, be
In semantic segmentation, we aim to train a pixel-level classifier to assign category labels to all pixels in an image, where labeled training images and unlabeled test images are from the same distribution and share the same label set. However, in a
Accurate estimation of the positions and shapes of microscale objects is crucial for automated imaging-guided manipulation using a non-contact technique such as optical tweezers. Perception methods that use traditional computer vision algorithms tend
Histopathology has played an essential role in cancer diagnosis. With the rapid advances in convolutional neural networks (CNN). Various CNN-based automated pathological image segmentation approaches have been developed in computer-assisted pathologi