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Marine species reproduce and compete while being advected by turbulent flows. It is largely unknown, both theoretically and experimentally, how population dynamics and genetics are changed by the presence of fluid flows. Discrete agent-based simulations in continuous space allow for accurate treatment of advection and number fluctuations, but can be computationally expensive for even modest organism densities. In this report, we propose an algorithm to overcome some of these challenges. We first provide a thorough validation of the algorithm in one and two dimensions without flow. Next, we focus on the case of weakly compressible flows in two dimensions. This models organisms such as phytoplankton living at a specific depth in the three-dimensional, incompressible ocean experiencing upwelling and/or downwelling events. We show that organisms born at sources in a two-dimensional time-independent flow experience an increase in fixation probability.
The key findings of classical population genetics are derived using a framework based on information theory using the entropies of the allele frequency distribution as a basis. The common results for drift, mutation, selection, and gene flow will be
Spatial constraints such as rigid barriers affect the dynamics of cell populations, potentially altering the course of natural evolution. In this paper, we study the population genetics of Escherichia coli proliferating in microchannels with open end
Many questions that we have about the history and dynamics of organisms have a geographical component: How many are there, and where do they live? How do they move and interbreed across the landscape? How were they moving a thousand years ago, and wh
Probability modelling for DNA sequence evolution is well established and provides a rich framework for understanding genetic variation between samples of individuals from one or more populations. We show that both classical and more recent models for
This work is about statistical genetics, an interdisciplinary topic between Statistical Physics and Population Biology. Our focus is on the phase of Quasi-Linkage Equilibrium (QLE) which has many similarities to equilibrium statistical mechanics, and