Planar bicolored (plabic) graphs are combinatorial objects introduced by Postnikov to give parameterizations of the positroid cells of the totally nonnegative Grassmannian $text{Gr}^{geq 0}(n,k)$. Any two plabic graphs for the same positroid cell can be related by a sequence of certain moves. The flip graph has plabic graphs as vertices and has edges connecting the plabic graphs which are related by a single move. A recent result of Galashin shows that plabic graphs can be seen as cross-sections of zonotopal tilings for the cyclic zonotope $Z(n,3)$. Taking this perspective, we show that the fundamental group of the flip graph is generated by cycles of length 4, 5, and 10, and use this result to prove a related conjecture of Dylan Thurston about triple crossing diagrams. We also apply our result to make progress on an instance of the generalized Baues problem.