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Quantification of physiological changes in plants can capture different drought mechanisms and assist in selection of tolerant varieties in a high throughput manner. In this context, an accurate 3D model of plant canopy provides a reliable representation for drought stress characterization in contrast to using 2D images. In this paper, we propose a novel end-to-end pipeline including 3D reconstruction, segmentation and feature extraction, leveraging deep neural networks at various stages, for drought stress study. To overcome the high degree of self-similarities and self-occlusions in plant canopy, prior knowledge of leaf shape based on features from deep siamese network are used to construct an accurate 3D model using structure from motion on wheat plants. The drought stress is characterized with a deep network based feature aggregation. We compare the proposed methodology on several descriptors, and show that the network outperforms conventional methods.
Machine vision for plant phenotyping is an emerging research area for producing high throughput in agriculture and crop science applications. Since 2D based approaches have their inherent limitations, 3D plant analysis is becoming state of the art fo
The paper presents a dictionary integration algorithm using 3D morphable face models (3DMM) for pose-invariant collaborative-representation-based face classification. To this end, we first fit a 3DMM to the 2D face images of a dictionary to reconstru
Automatic plant classification is a challenging problem due to the wide biodiversity of the existing plant species in a fine-grained scenario. Powerful deep learning architectures have been used to improve the classification performance in such a fin
Convolutional Neural Networks (CNNs) traditionally encode translation equivariance via the convolution operation. Generalization to other transformations has recently received attraction to encode the knowledge of the data geometry in group convoluti
Knowing a biomolecules structure is inherently linked to and a prerequisite for any detailed understanding of its function. Significant effort has gone into developing technologies for structural characterization. These technologies do not directly p