The future GAMMA-400 space mission is aimed for the study of gamma rays in the energy range from ~20 MeV up to ~1 TeV. The observations will carry out with GAMMA-400 gamma-ray telescope installed on-board the Russian Space Observatory. We present the detailed description of the architecture and performances of scientific data acquisition system (SDAQ) developing by SRISA for the GAMMA-400 instrument. SDAQ provides the collection of the data from telescope detector subsystems (up to 100 GB per day), the preliminary processing of scientific information and its accumulation in mass memory, transferring the information from mass memory to the satellite high-speed radio line for its transmission to the ground station, the control and monitoring of the telescope subsystems. SDAQ includes special space qualified chipset designed by SRISA and has scalable modular net structure based on fast and high-reliable serial interfaces.