The concatenated Greenberger-Horne-Zeilinger (C-GHZ) state has great potential application in the future quantum network, for it is robust to the decoherence in a noisy environment. In the paper, we propose a complete C-GHZ state analysis protocol with the help of some auxiliary single atoms trapped in the low-quality cavities. In the protocol, we essentially make the parity check for the photonic states based on the photonic Faraday rotation effect, and complete the analysis task combined with the Hadamard operation and single qubit measurement. The success probability of our protocol can reach 100% in principle, and the number of physical qubit encoded in each logic qubit does not affect the analysis. Our analysis protocol may have its practical application in future long-distance quantum communication.
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