We show that the number of combinatorial types of clusters of type $D_4$ modulo reflection-rotation is exactly equal to the number of combinatorial types of tropical planes in $mathbb{TP}^5$. This follows from a result of Sturmfels and Speyer which classifies these tropical planes into seven combinatorial classes using a detailed study of the tropical Grassmannian $operatorname{Gr}(3,6)$. Speyer and Williams show that the positive part $operatorname{Gr}^+(3,6)$ of this tropical Grassmannian is combinatorially equivalent to a small coarsening of the cluster fan of type $D_4$. We provide a structural bijection between the rays of $operatorname{Gr}^+(3,6)$ and the almost positive roots of type $D_4$ which makes this connection more precise. This bijection allows us to use the pseudotriangulations model of the cluster algebra of type $D_4$ to describe the equivalence of positive tropical planes in $mathbb{TP}^5$, giving a combinatorial model which characterizes the combinatorial types of tropical planes using automorphisms of pseudotriangulations of the octogon.
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