Temperature dependence of pion and sigma-meson screening masses is evaluated by the Polyakov-loop extended Nambu--Jona-Lasinio model with the entanglement vertex (EPNJL model). We propose a practical way of calculating meson screening masses in the NJL-type effective models. The method based on the Pauli-Villars regularization solves the well-known difficulty that the evaluation of screening masses is not easy in the NJL-type effective models. The method is applied to analyze temperature dependence of pion screening masses calculated with state-of-the-art lattice simulations with success in reproducing the lattice QCD results. We predict the temperature dependence of pole mass by using EPNJL model.