We demonstrate that thermoelectric currents in superconducting bilayers with a spin-active interface are controlled by the two competing processes. On one hand, spin-sensitive quasiparticle scattering at such interface generates electron-hole imbalance and yields orders-of-magnitude enhancement of the thermoelectric effect in the system. On the other hand, this electron-hole imbalance gets suppressed in the superconductor bulk due to electron scattering on non-magnetic impurities. As a result, large thermoelectric currents can only flow in the vicinity of the spin-active interface and decay away from this interface at a distance exceeding the electron elastic mean free path $ell$. The magnitude of the thermoelectric effect reaches its maximum provided $ell$ becomes of order of the total bilayer thickness.
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