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The Chem2Bio2RDF portal is a Linked Open Data (LOD) portal for systems chemical biology aiming for facilitating drug discovery. It converts around 25 different datasets on genes, compounds, drugs, pathways, side effects, diseases, and MEDLINE/PubMed documents into RDF triples and links them to other LOD bubbles, such as Bio2RDF, LODD and DBPedia. The portal is based on D2R server and provides a SPARQL endpoint, but adds on few unique features like RDF faceted browser, user-friendly SPARQL query generator, MEDLINE/PubMed cross validation service, and Cytoscape visualization plugin. Three use cases demonstrate the functionality and usability of this portal.
Invited contribution to Quantum Aspects of Life, D. Abbott Ed. (World Scientific, Singapore, 2007).
Though it goes without saying that linear algebra is fundamental to mathematical biology, polynomial algebra is less visible. In this article, we will give a brief tour of four diverse biological problems where multivariate polynomials play a central
In the Open Data Portal Germany (OPAL) project, a pipeline of the following data refinement steps has been developed: requirements analysis, data acquisition, analysis, conversion, integration and selection. 800,000 datasets in DCAT format have been produced.
Linked Open Data (LOD) is the publicly available RDF data in the Web. Each LOD entity is identfied by a URI and accessible via HTTP. LOD encodes globalscale knowledge potentially available to any human as well as artificial intelligence that may want
In this work we discuss the related challenges and describe an approach towards the fusion of state-of-the-art technologies from the Spoken Dialogue Systems (SDS) and the Semantic Web and Information Retrieval domains. We envision a dialogue system n