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تسجيل مستخدم جديدOn Critical Relative Distance of DNA Codes for Additive Stem Similarity
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We consider DNA codes based on the nearest-neighbor (stem) similarity model which adequately reflects the hybridization potential of two DNA sequences. Our aim is to present a survey of bounds on the rate of DNA codes with respect to a thermodynamically motivated similarity measure called an additive stem similarity. These results yield a method to analyze and compare known samples of the nearest neighbor thermodynamic weights associated to stacked pairs that occurred in DNA secondary structures.
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DNA code design aims to generate a set of DNA sequences (codewords) with minimum likelihood of undesired hybridizations among sequences and their reverse-complement (RC) pairs (cross-hybridization). Inspired by the distinct hybridization affinities (
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