We experimentally demonstrate optical spectroscopy of magnetically trapped atoms on an atom chip. High resolution optical spectra of individual trapped clouds are recorded within a few hundred milliseconds. Detection sensitivities close to the single atom level are obtained by photoionization of the excited atoms and subsequent ion detection with a channel electron multiplier. Temperature and decay rates of the trapped atomic cloud can be monitored in real time for several seconds with only little detection losses. The spectrometer can be used for investigations of ultracold atomic mixtures and for the development of interferometric quantum sensors on atom chips.
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